STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP99741.1Hypothetical protein. (279 aa)    
Predicted Functional Partners:
GAP99740.1
DNA methylase.
       0.531
GAP99738.1
DNA polymerase III beta subunit.
       0.511
GAP99739.1
Hypothetical protein.
       0.511
GAP99742.1
Hypothetical protein.
       0.489
GAP99743.1
Hypothetical protein.
       0.489
GAP99744.1
Hypothetical protein.
       0.489
GAP99737.1
Group 2 RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.478
GAP99736.1
Hypothetical protein.
       0.461
GAP99735.1
Hypothetical protein.
       0.440
Your Current Organism:
Leptolyngbya sp. NIES2104
NCBI taxonomy Id: 1552121
Other names: L. sp. NIES-2104, Leptolyngbya sp. NIES-2104
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