STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0071Hypothetical protein. (503 aa)    
Predicted Functional Partners:
LIP_0070
DNA polymerase III subunit epsilon.
    0.990
LIP_0075
Sodium:solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.870
LIP_0072
acetyl-CoA synthetase.
  
  
 0.671
purL
Phosphoribosylformylglycinamidine synthase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; Belongs to the FGAMS family.
  
  
 0.568
LIP_1398
Glutamate synthase.
 
   
 0.567
LIP_0068
LytTR family transcriptional regulator.
       0.491
LIP_0069
Histidine kinase.
       0.491
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.472
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
 
 0.420
LIP_0073
Sodium:solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.404
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.