STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0075Sodium:solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (608 aa)    
Predicted Functional Partners:
LIP_0071
Hypothetical protein.
 
  
 0.870
LIP_0074
Hypothetical protein.
       0.790
LIP_0072
acetyl-CoA synthetase.
  
  
 0.766
LIP_0073
Sodium:solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.706
LIP_0031
AMP-dependent synthetase.
  
  
 0.675
LIP_0835
acetyl-CoA synthetase.
  
  
 0.675
LIP_0070
DNA polymerase III subunit epsilon.
 
    0.556
LIP_0076
Carboxypeptidase; Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues.
       0.520
LIP_1029
Malate synthase; Belongs to the malate synthase family.
  
  
 0.512
LIP_0069
Histidine kinase.
 
     0.424
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.