STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0159Ribulose 5-phosphate epimerase. (378 aa)    
Predicted Functional Partners:
LIP_0160
Alcohol dehydrogenase.
 
  
 0.850
LIP_2762
Hypothetical protein; Belongs to the HpcH/HpaI aldolase family.
   
    0.762
LIP_0161
Hypothetical protein.
       0.714
LIP_2166
Pyoverdin chromophore biosynthetic protein pvcC.
  
     0.665
LIP_2531
Homocysteine S-methyltransferase.
  
  
 0.647
LIP_2168
Catechol 2,3 dioxygenase.
 
  
 0.632
LIP_0475
Hypothetical protein.
    
  0.559
LIP_3423
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; Belongs to the RuBisCO large chain family.
  
  
 0.553
LIP_2358
Hypothetical protein.
  
     0.536
araB
Ribulokinase.
 
  
 0.532
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.