STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0310fatty-acid--CoA ligase. (618 aa)    
Predicted Functional Partners:
LIP_0167
Long-chain fatty acid--CoA ligase.
 
 
0.857
LIP_1076
Long-chain fatty acid--CoA ligase.
  
  
 
0.825
LIP_1365
AMP-binding protein.
  
  
 
0.825
LIP_0309
Hypothetical protein.
       0.773
LIP_1077
ABC transporter.
    0.771
LIP_0276
Putative phenylacetate-coenzyme A ligase.
 
    0.760
LIP_1362
ABC transporter substrate-binding protein.
 
    0.746
LIP_1073
ABC transporter substrate-binding protein.
 
    0.741
LIP_1072
Branched-chain amino acid ABC transporter ATP-binding protein.
    0.739
LIP_1361
Branched-chain amino acid ABC transporter ATP-binding protein.
    0.728
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.