STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0315Sugar ABC transporter substrate-binding protein. (422 aa)    
Predicted Functional Partners:
LIP_0313
Sugar ABC transporter permease.
 
  0.991
LIP_0314
ABC transporter permease.
   0.901
LIP_0317
Hypothetical protein.
 
     0.742
LIP_0917
Sugar ABC transporter permease.
  
   0.722
LIP_2442
ABC transporter permease.
  
   0.719
LIP_2450
ABC transporter permease.
  
   0.716
LIP_0316
Hypothetical protein.
 
     0.707
LIP_2035
Sugar ABC transporter permease.
  
   0.670
LIP_2464
ABC transporter permease.
  
   0.627
LIP_2451
ABC transporter permease.
 
   0.593
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.