STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0318Hypothetical protein. (396 aa)    
Predicted Functional Partners:
LIP_0317
Hypothetical protein.
 
     0.577
LIP_0316
Hypothetical protein.
 
     0.575
LIP_2125
Glucokinase.
 
  
0.548
LIP_1398
Glutamate synthase.
  
  
 0.477
pheA
Hypothetical protein.
   
 
 0.475
LIP_1413
Iron dependent repressor.
  
  
 0.462
birA
biotin-(acetyl-CoA carboxylase) ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.446
LIP_0319
ABC transporter ATP-binding protein.
       0.428
LIP_0320
Branched-chain amino acid ABC transporter ATP-binding protein.
       0.428
LIP_0321
ABC transporter substrate-binding protein.
       0.428
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.