STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0391Hypothetical protein. (222 aa)    
Predicted Functional Partners:
LIP_2359
GlcNAc-PI de-N-acetylase.
  
 0.982
LIP_2357
6-phosphogluconate dehydrogenase.
     0.949
LIP_2360
Dimethylmenaquinone methyltransferase.
  
  
 
0.916
LIP_1253
Acetolactate synthase.
     
  0.900
LIP_1254
Acetolactate synthase.
     
  0.900
LIP_2418
Acetolactate synthase; Belongs to the TPP enzyme family.
     
  0.900
LIP_2168
Catechol 2,3 dioxygenase.
 
   
 0.722
LIP_2358
Hypothetical protein.
 
     0.665
LIP_2389
Hypothetical protein.
 
     0.614
LIP_3491
RNA helicase; Belongs to the DEAD box helicase family.
    
 
 0.536
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.