STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0422ABC transporter substrate-binding protein. (414 aa)    
Predicted Functional Partners:
LIP_0424
Sugar ABC transporter permease.
 
   0.937
LIP_0423
Sugar ABC transporter permease.
   0.905
LIP_0196
ABC transporter permease.
 
   0.846
LIP_0197
Sugar ABC transporter permease.
  
   0.838
LIP_1272
ABC transporter permease.
 
   0.831
LIP_2065
ABC transporter permease.
 
   0.781
LIP_2297
ABC transporter substrate-binding protein.
  
     0.762
LIP_2215
Sugar ABC transporter permease.
  
   0.686
LIP_2066
Binding-protein-dependent transport systems inner membrane component.
  
   0.685
LIP_1271
ABC transporter permease.
  
   0.669
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.