STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0465ABC transporter substrate-binding protein. (422 aa)    
Predicted Functional Partners:
LIP_2037
Sugar ABC transporter substrate-binding protein.
  
     0.744
LIP_0849
Hypothetical protein.
  
     0.737
LIP_0411
ABC transporter substrate-binding protein.
  
     0.717
LIP_0467
ABC transporter permease.
  
   0.713
LIP_0346
ABC transporter substrate-binding protein.
  
     0.705
LIP_0466
Sugar ABC transporter permease.
  
   0.703
LIP_2218
Sugar ABC transporter substrate-binding protein.
  
     0.690
LIP_2144
ABC transporter substrate-binding protein.
  
     0.686
LIP_2123
Sugar ABC transporter substrate-binding protein.
  
     0.684
LIP_2073
ABC transporter substrate-binding protein.
  
     0.677
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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