STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0559L-rhamnose mutarotase. (104 aa)    
Predicted Functional Partners:
LIP_0554
Sugar isomerase.
 
  
 0.902
LIP_0553
Short-chain dehydrogenase.
 
  
 0.893
LIP_0552
Carbohydrate kinase.
 
  
 0.887
LIP_0558
Sugar ABC transporter substrate-binding protein.
 
    0.860
LIP_0568
Carbohydrate kinase.
  
  
 0.689
LIP_2041
Actin.
  
  
 0.689
xylB
Xylulokinase.
  
  
 0.689
LIP_2185
Hypothetical protein; Belongs to the FGGY kinase family.
  
  
 0.689
LIP_2207
Hypothetical protein.
  
  
 0.689
LIP_2226
Gluconokinase; Belongs to the FGGY kinase family.
  
  
 0.689
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.