STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_0597Formate dehydrogenase. (96 aa)    
Predicted Functional Partners:
LIP_0598
Formate dehydrogenase subunit alpha; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     0.989
LIP_0599
NADH dehydrogenase subunit F.
  
 
 0.976
LIP_0872
NADP oxidoreductase.
  
 
 0.937
rnfB
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.932
LIP_0600
NADH dehydrogenase.
 
     0.880
LIP_1347
Transcriptional initiation protein Tat; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.752
LIP_3323
Tungsten formylmethanofuran dehydrogenase.
   
 
 0.729
LIP_0832
Formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.701
LIP_0582
Nickel-dependent hydrogenase large subunit.
   
 
 0.698
LIP_0583
Oxidoreductase.
   
 
 0.683
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.