LIP_0607 protein (Limnochorda pilosa) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

LIP_0607

ABC transporter substrate-binding protein. (504 aa)

Predicted Functional Partners:

LIP_3221

0.908

LIP_0530

0.800

LIP_3220

0.800

LIP_2347

0.785

LIP_2229

0.724

LIP_1048

0.722

LIP_1047

0.667

LIP_2133

0.667

LIP_1504

0.664

LIP_2137

0.656

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LIP_0530	LIP_0607	Peptide ABC transporter.	ABC transporter substrate-binding protein.	0.800
LIP_0530	LIP_1047	Peptide ABC transporter.	Peptide ABC transporter permease.	0.823
LIP_0530	LIP_3220	Peptide ABC transporter.	Peptide ABC transporter permease.	0.823
LIP_0607	LIP_0530	ABC transporter substrate-binding protein.	Peptide ABC transporter.	0.800
LIP_0607	LIP_1047	ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.667
LIP_0607	LIP_1048	ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.722
LIP_0607	LIP_1504	ABC transporter substrate-binding protein.	Glutathione ABC transporter permease.	0.664
LIP_0607	LIP_2133	ABC transporter substrate-binding protein.	Glutathione ABC transporter permease.	0.667
LIP_0607	LIP_2137	ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.656
LIP_0607	LIP_2229	ABC transporter substrate-binding protein.	Glutathione ABC transporter permease.	0.724
LIP_0607	LIP_2347	ABC transporter substrate-binding protein.	Peptide ABC transporter.	0.785
LIP_0607	LIP_3220	ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.800
LIP_0607	LIP_3221	ABC transporter substrate-binding protein.	Peptide ABC transporter.	0.908
LIP_1047	LIP_0530	Peptide ABC transporter permease.	Peptide ABC transporter.	0.823
LIP_1047	LIP_0607	Peptide ABC transporter permease.	ABC transporter substrate-binding protein.	0.667
LIP_1047	LIP_1048	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.992
LIP_1047	LIP_1504	Peptide ABC transporter permease.	Glutathione ABC transporter permease.	0.828
LIP_1047	LIP_2133	Peptide ABC transporter permease.	Glutathione ABC transporter permease.	0.891
LIP_1047	LIP_2137	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.823
LIP_1047	LIP_2229	Peptide ABC transporter permease.	Glutathione ABC transporter permease.	0.824