STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1014Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. (405 aa)    
Predicted Functional Partners:
LIP_1013
ABC transporter.
  
 0.946
LIP_2089
Spermidine/putrescine ABC transporter permease.
 
 0.943
LIP_2088
ABC transporter permease.
 
  
 0.935
LIP_2087
Polyamine ABC transporter substrate-binding protein.
  
 0.925
LIP_2887
Multidrug ABC transporter substrate-binding protein.
 
 
    0.833
LIP_0943
Peptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
    
0.818
LIP_1493
Molybdenum ABC transporter permease.
     0.784
LIP_1012
ABC transporter substrate-binding protein.
     
 0.688
LIP_3364
Iron ABC transporter permease.
  
 0.669
LIP_2765
Membrane protein.
  
 0.666
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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