STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1133Carbon monoxide dehydrogenase. (172 aa)    
Predicted Functional Partners:
LIP_1134
Carbon monoxide dehydrogenase.
 
 0.999
LIP_1135
Carbon-monoxide dehydrogenase.
 
 0.999
LIP_2909
Aldehyde oxidase.
 
 0.998
LIP_2908
Molybdopterin dehydrogenase.
 
 0.985
LIP_1144
Hypothetical protein.
 
  
 0.835
LIP_1142
Xanthine dehydrogenase.
 
  
 0.829
LIP_1132
Carbon monoxide dehydrogenase subunit G.
 
     0.745
LIP_1145
Bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB.
 
  
 0.661
LIP_0307
Aminotransferase class I/II.
 
      0.616
LIP_1141
CoxE.
 
     0.452
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.