STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1188UDP-glucose 4-epimerase. (417 aa)    
Predicted Functional Partners:
LIP_1189
Galactose-1-phosphate uridylyltransferase.
  
 0.995
LIP_2987
Galactose-1-phosphate uridylyltransferase.
  
 0.980
LIP_2000
UDP-glucose 6-dehydrogenase.
  
 
 0.924
LIP_3056
UDP-glucose 4-epimerase.
  
  
 
0.914
LIP_1195
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.913
LIP_1187
LacI family transcriptional regulator.
  
 
 0.770
LIP_1190
Sugar ABC transporter substrate-binding protein.
 
   
 0.499
LIP_2130
Spore coat protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
0.478
LIP_0146
Alpha-amylase.
  
  
 0.463
LIP_2984
Cyclomaltodextrinase.
  
  
 0.439
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.