STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1194Beta-galactosidase. (689 aa)    
Predicted Functional Partners:
LIP_1193
Antitoxin.
 
  
 0.928
LIP_1195
Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.798
LIP_0426
Hypothetical protein; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.739
LIP_2123
Sugar ABC transporter substrate-binding protein.
 
  
 0.588
LIP_0849
Hypothetical protein.
 
  
 0.584
LIP_1181
Alpha-mannosidase.
 
     0.573
LIP_1190
Sugar ABC transporter substrate-binding protein.
 
  
 0.565
LIP_0247
Sodium:melibiose symporter.
 
  
 0.564
LIP_1192
Sugar ABC transporter permease.
 
  
 0.559
LIP_0938
Glycosyl hydrolase family 3; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.557
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.