STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1205Hydrogenase. (405 aa)    
Predicted Functional Partners:
LIP_1206
4Fe-4S ferredoxin.
 
 0.994
LIP_2529
Cytochrome C.
 
 
 
 0.951
LIP_3414
4Fe-4S ferredoxin.
  
 
 0.934
LIP_2876
Hypothetical protein.
   
 
 0.930
LIP_0379
4Fe-4S ferredoxin.
 
 
 0.925
LIP_0297
Dimethyl sulfoxide reductase subunit B.
 
 
 0.915
LIP_1346
4Fe-4S ferredoxin.
 
 
 0.914
LIP_1811
Formate dehydrogenase-N subunit beta.
 
 
 0.911
LIP_0375
4Fe-4S ferredoxin.
 
 
 0.908
LIP_1513
Hypothetical protein.
   
 
 0.900
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.