STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1341Hypothetical protein. (514 aa)    
Predicted Functional Partners:
LIP_1345
Polysulfide reductase NrfD.
 
     0.826
LIP_1347
Transcriptional initiation protein Tat; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.802
LIP_1349
YeeE/YedE family protein.
 
     0.798
LIP_1343
Cytochrome B6.
 
     0.766
LIP_0368
Hypothetical protein.
  
     0.727
LIP_1348
Hypothetical protein.
 
     0.721
LIP_1342
Hypothetical protein.
       0.705
LIP_1344
(2Fe-2S)-binding protein.
 
     0.687
LIP_1340
AraC family transcriptional regulator.
       0.655
LIP_1346
4Fe-4S ferredoxin.
       0.504
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.