STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1344(2Fe-2S)-binding protein. (152 aa)    
Predicted Functional Partners:
LIP_1343
Cytochrome B6.
 
 0.998
LIP_0599
NADH dehydrogenase subunit F.
   
 
 0.997
LIP_1509
Cytochrome B6.
 
 0.992
LIP_2876
Hypothetical protein.
  
 0.990
LIP_1510
Menaquinol-cytochrome C reductase.
 
 0.986
LIP_2529
Cytochrome C.
  
 
 0.975
LIP_1513
Hypothetical protein.
  
 
 0.965
LIP_0104
Cytochrome C oxidase subunit III.
  
 
 0.964
LIP_0108
Bb3-type cytochrome oxidase subunit IV.
  
 
 0.964
nuoD
NADH dehydrogenase subunit D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 
 0.961
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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