STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1373Beta-glucosidase. (445 aa)    
Predicted Functional Partners:
LIP_2533
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
  
 0.925
LIP_2120
Glycoside hydrolase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.923
LIP_0938
Glycosyl hydrolase family 3; Belongs to the glycosyl hydrolase 3 family.
    
 0.919
LIP_0023
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
  
  
 
0.904
LIP_2181
Phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.824
LIP_1155
Tagatose-bisphosphate aldolase.
  
  
 0.732
LIP_3425
Tagatose-bisphosphate aldolase.
  
  
 0.732
LIP_1372
GTPase.
       0.714
LIP_2077
Ribose 5-phosphate isomerase.
  
  
 0.600
LIP_1371
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
     
 0.510
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.