LIP_1654 protein (Limnochorda pilosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LIP_1654

ATP synthase. (436 aa)

Predicted Functional Partners:

LIP_1653

0.998

LIP_1665

0.998

LIP_1652

0.996

LIP_1651

0.995

LIP_1649

0.988

fliE

0.985

LIP_1658

0.982

LIP_2962

0.982

LIP_1657

0.977

flhB

0.976

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LIP_1649	LIP_1651	LIP_1649	LIP_1651	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.999
LIP_1649	LIP_1652	LIP_1649	LIP_1652	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar motor switch protein FliG.	0.992
LIP_1649	LIP_1653	LIP_1649	LIP_1653	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Hypothetical protein.	0.978
LIP_1649	LIP_1654	LIP_1649	LIP_1654	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	ATP synthase.	0.988
LIP_1649	LIP_1657	LIP_1649	LIP_1657	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Hypothetical protein.	0.939
LIP_1649	LIP_1658	LIP_1649	LIP_1658	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar hook capping protein.	0.998
LIP_1649	LIP_1665	LIP_1649	LIP_1665	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Hypothetical protein.	0.996
LIP_1649	LIP_2962	LIP_1649	LIP_2962	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar biosynthesis protein FliS.	0.983
LIP_1649	flhB	LIP_1649	LIP_1670	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar biosynthesis protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	0.971
LIP_1649	fliE	LIP_1649	LIP_1650	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	Flagellar hook-basal body protein FliE.	0.998
LIP_1651	LIP_1649	LIP_1651	LIP_1649	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.	0.999
LIP_1651	LIP_1652	LIP_1651	LIP_1652	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar motor switch protein FliG.	0.999
LIP_1651	LIP_1653	LIP_1651	LIP_1653	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Hypothetical protein.	0.986
LIP_1651	LIP_1654	LIP_1651	LIP_1654	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	ATP synthase.	0.995
LIP_1651	LIP_1657	LIP_1651	LIP_1657	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Hypothetical protein.	0.969
LIP_1651	LIP_1658	LIP_1651	LIP_1658	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar hook capping protein.	0.994
LIP_1651	LIP_1665	LIP_1651	LIP_1665	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Hypothetical protein.	0.990
LIP_1651	LIP_2962	LIP_1651	LIP_2962	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar biosynthesis protein FliS.	0.950
LIP_1651	flhB	LIP_1651	LIP_1670	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar biosynthesis protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.	0.972
LIP_1651	fliE	LIP_1651	LIP_1650	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	Flagellar hook-basal body protein FliE.	0.998