LIP_1723 protein (Limnochorda pilosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LIP_1723

Peptide ABC transporter permease. (342 aa)

Predicted Functional Partners:

LIP_1724

0.958

LIP_1722

0.899

LIP_1047

0.819

LIP_0633

0.818

LIP_2136

0.818

LIP_1423

0.815

LIP_2228

0.814

LIP_2346

0.814

LIP_2132

0.812

LIP_3220

0.805

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LIP_0633	LIP_1722	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.674
LIP_0633	LIP_1723	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.818
LIP_1047	LIP_1722	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.751
LIP_1047	LIP_1723	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.819
LIP_1423	LIP_1722	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.561
LIP_1423	LIP_1723	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.815
LIP_1722	LIP_0633	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.674
LIP_1722	LIP_1047	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.751
LIP_1722	LIP_1423	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.561
LIP_1722	LIP_1723	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.899
LIP_1722	LIP_1724	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.884
LIP_1722	LIP_2132	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.565
LIP_1722	LIP_2136	Peptide ABC transporter substrate-binding protein.	Hypothetical protein.	0.658
LIP_1722	LIP_2228	Peptide ABC transporter substrate-binding protein.	Diguanylate cyclase.	0.639
LIP_1722	LIP_2346	Peptide ABC transporter substrate-binding protein.	Glutathione ABC transporter permease GsiD.	0.605
LIP_1722	LIP_3220	Peptide ABC transporter substrate-binding protein.	Peptide ABC transporter permease.	0.722
LIP_1723	LIP_0633	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.818
LIP_1723	LIP_1047	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.819
LIP_1723	LIP_1423	Peptide ABC transporter permease.	Peptide ABC transporter permease.	0.815
LIP_1723	LIP_1722	Peptide ABC transporter permease.	Peptide ABC transporter substrate-binding protein.	0.899