STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1780Stage II sporulation protein P. (410 aa)    
Predicted Functional Partners:
LIP_1781
Hypothetical protein.
     0.968
LIP_1777
Hypothetical protein.
 
     0.947
LIP_1779
Membrane protein.
 
     0.881
LIP_2600
Hypothetical protein.
  
   
 0.804
LIP_1775
Stage IV sporulation protein A.
 
   
 0.803
LIP_1769
Transcriptional regulator.
 
     0.787
LIP_1768
Hypothetical protein.
 
     0.785
LIP_1778
Hypothetical protein.
       0.773
LIP_3591
Stage II sporulation protein SpoIID.
  
  
 0.767
LIP_3603
4-diphosphocytidyl-2C-methyl-D-erythritol kinase.
  
     0.752
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.