STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1911DeoR family transcriptional regulator. (263 aa)    
Predicted Functional Partners:
LIP_2181
Phosphofructokinase; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
 
  
 0.925
LIP_0277
Hypothetical protein.
    
   0.849
LIP_1910
Hypothetical protein.
 
    0.818
LIP_1909
4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
       0.756
LIP_2068
Sugar isomerase (SIS).
 
  
 0.522
LIP_1908
Gluconate permease.
  
    0.490
LIP_2326
Tagatose-bisphosphate aldolase.
  
 0.450
LIP_1913
Transcriptional regulator.
     
 0.443
LIP_1211
FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.440
LIP_1912
Hypothetical protein.
       0.432
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.