STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_1960Cytochrome C oxidase subunit II. (160 aa)    
Predicted Functional Partners:
LIP_1961
Cytochrome C oxidase subunit I.
 
 0.999
LIP_0104
Cytochrome C oxidase subunit III.
 
 0.998
LIP_0105
Cytochrome C oxidase; Belongs to the heme-copper respiratory oxidase family.
 
 0.998
LIP_0108
Bb3-type cytochrome oxidase subunit IV.
 
 0.998
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily.
 
 
 0.983
LIP_2876
Hypothetical protein.
 
 
 0.957
LIP_1509
Cytochrome B6.
 
 
 0.950
LIP_1826
NADH:ubiquinone oxidoreductase subunit M.
   
 
 0.947
LIP_1343
Cytochrome B6.
  
 
 0.942
LIP_1957
Hypothetical protein.
  
   0.931
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.