LIP_1992 protein (Limnochorda pilosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LIP_1992

Hypothetical protein. (444 aa)

Predicted Functional Partners:

LIP_1990

0.955

LIP_2071

0.912

LIP_1991

0.773

LIP_0411

0.756

LIP_0346

0.752

LIP_2284

0.706

LIP_2037

0.666

LIP_2444

0.658

LIP_0465

0.657

LIP_2011

0.651

Your Current Organism:

Limnochorda pilosa

NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LIP_0346	LIP_0465	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.705
LIP_0346	LIP_1992	ABC transporter substrate-binding protein.	Hypothetical protein.	0.752
LIP_0346	LIP_2011	ABC transporter substrate-binding protein.	Sugar ABC transporter.	0.752
LIP_0346	LIP_2037	ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.684
LIP_0346	LIP_2071	ABC transporter substrate-binding protein.	ABC transporter permease.	0.431
LIP_0346	LIP_2284	ABC transporter substrate-binding protein.	Hypothetical protein.	0.533
LIP_0346	LIP_2444	ABC transporter substrate-binding protein.	Extracellular solute-binding protein.	0.695
LIP_0411	LIP_0465	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.717
LIP_0411	LIP_1992	ABC transporter substrate-binding protein.	Hypothetical protein.	0.756
LIP_0411	LIP_2011	ABC transporter substrate-binding protein.	Sugar ABC transporter.	0.755
LIP_0411	LIP_2284	ABC transporter substrate-binding protein.	Hypothetical protein.	0.554
LIP_0411	LIP_2444	ABC transporter substrate-binding protein.	Extracellular solute-binding protein.	0.667
LIP_0465	LIP_0346	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.705
LIP_0465	LIP_0411	ABC transporter substrate-binding protein.	ABC transporter substrate-binding protein.	0.717
LIP_0465	LIP_1992	ABC transporter substrate-binding protein.	Hypothetical protein.	0.657
LIP_0465	LIP_2037	ABC transporter substrate-binding protein.	Sugar ABC transporter substrate-binding protein.	0.744
LIP_1990	LIP_1991	Sugar ABC transporter permease.	ABC transporter permease.	0.962
LIP_1990	LIP_1992	Sugar ABC transporter permease.	Hypothetical protein.	0.955
LIP_1990	LIP_2037	Sugar ABC transporter permease.	Sugar ABC transporter substrate-binding protein.	0.452
LIP_1990	LIP_2071	Sugar ABC transporter permease.	ABC transporter permease.	0.911