STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_2225Selenocysteine synthase. (386 aa)    
Predicted Functional Partners:
LIP_2013
Hypothetical protein.
  
  
 
0.926
LIP_2006
Hypothetical protein.
  
 
  0.915
LIP_2214
Hypothetical protein.
  
  
 
0.914
LIP_2016
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
     
  0.900
LIP_2213
Dihydroorotase.
 
  
 0.864
LIP_0358
Translation elongation factor.
 
  
 0.793
LIP_3527
Translation elongation factor.
 
  
 0.793
LIP_2224
Endoribonuclease L-PSP.
       0.773
LIP_2226
Gluconokinase; Belongs to the FGGY kinase family.
       0.645
LIP_2223
Ski2-like helicase.
       0.481
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.