STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_23576-phosphogluconate dehydrogenase. (261 aa)    
Predicted Functional Partners:
LIP_2360
Dimethylmenaquinone methyltransferase.
     0.980
LIP_0391
Hypothetical protein.
     0.949
LIP_2359
GlcNAc-PI de-N-acetylase.
 
     0.904
LIP_2358
Hypothetical protein.
 
     0.897
LIP_2168
Catechol 2,3 dioxygenase.
 
  
 0.769
LIP_2389
Hypothetical protein.
 
     0.737
LIP_2355
C4-dicarboxylate ABC transporter.
  
    0.518
LIP_2356
C4-dicarboxylate ABC transporter substrate-binding protein.
       0.510
LIP_1889
Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
  
 0.501
LIP_2169
Carboxymuconolactone decarboxylase.
  
  
 0.501
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.