STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_2690Two-component sensor histidine kinase. (621 aa)    
Predicted Functional Partners:
LIP_2689
LuxR family transcriptional regulator.
 
 
 0.990
LIP_0291
Chemotaxis protein CheY.
 
 0.958
LIP_1062
LuxR family transcriptional regulator.
 
 0.958
LIP_1404
Chemotaxis protein CheY.
 
 0.958
LIP_1408
LuxR family transcriptional regulator.
 
 0.958
LIP_2849
LuxR family transcriptional regulator.
 
 
 0.958
LIP_2851
LuxR family transcriptional regulator.
 
 
 0.958
LIP_2977
Chemotaxis protein CheY.
 
 
 0.958
LIP_3463
Multi-sensor signal transduction histidine kinase.
 
 
0.958
LIP_3464
LuxR family transcriptional regulator.
 
 0.958
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.