STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_2766Hypothetical protein. (362 aa)    
Predicted Functional Partners:
LIP_2765
Membrane protein.
 
 
 0.992
LIP_3364
Iron ABC transporter permease.
 
 
 0.953
LIP_2764
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.939
LIP_3365
Iron ABC transporter substrate-binding protein.
  
  
  0.920
LIP_3363
ABC transporter; Belongs to the ABC transporter superfamily.
  
 
 0.862
LIP_1013
ABC transporter.
  
  
 0.713
LIP_0352
MFS transporter.
  
  
 0.672
LIP_1011
Iron permease.
   
  
 0.489
LIP_0332
ABC transporter substrate-binding protein.
  
    0.474
LIP_2767
IclR family transcriptional regulator.
       0.474
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.