STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_3000Peptidase S16. (217 aa)    
Predicted Functional Partners:
LIP_0056
Molybdenum cofactor biosynthesis protein MoeB.
   
 0.823
LIP_2045
Hypothetical protein.
    
 0.687
LIP_3001
Proline dehydrogenase.
     
 0.648
LIP_0564
Peptidase C11 clostripain.
     
 0.574
LIP_1595
Hypothetical protein.
     
 0.574
LIP_0843
Hypothetical protein.
    
  0.523
LIP_1097
RCC1 repeat-containing protein.
    
  0.523
LIP_1100
Hypothetical protein.
    
  0.523
LIP_0057
Peptidase.
    
  0.520
LIP_3002
Amino acid ABC transporter substrate-binding protein.
       0.471
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.