STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_33242-ketoisovalerate ferredoxin reductase. (367 aa)    
Predicted Functional Partners:
LIP_3325
MFS transporter.
 0.999
LIP_3338
2-oxoglutarate synthase.
 
 0.988
LIP_0016
Ferredoxin.
 
 0.984
LIP_3409
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
 0.979
LIP_3585
2-oxoacid ferredoxin oxidoreductase subunit beta.
 0.978
LIP_3534
2-oxoacid ferredoxin oxidoreductase.
 0.977
LIP_3326
2-oxoglutarate ferredoxin oxidoreductase subunit gamma.
 
 
 0.957
LIP_3535
Pyruvate ferredoxin oxidoreductase.
 
0.953
LIP_3584
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
 
0.951
LIP_3408
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
 
0.950
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.