Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
LIP_0017 | LIP_0224 | Pyruvate synthase. | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.832 |
LIP_0017 | LIP_3323 | Pyruvate synthase. | Tungsten formylmethanofuran dehydrogenase. | 0.576 |
LIP_0017 | LIP_3324 | Pyruvate synthase. | 2-ketoisovalerate ferredoxin reductase. | 0.859 |
LIP_0017 | LIP_3325 | Pyruvate synthase. | MFS transporter. | 0.852 |
LIP_0017 | LIP_3326 | Pyruvate synthase. | 2-oxoglutarate ferredoxin oxidoreductase subunit gamma. | 0.980 |
LIP_0017 | LIP_3534 | Pyruvate synthase. | 2-oxoacid ferredoxin oxidoreductase. | 0.870 |
LIP_0224 | LIP_0017 | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | Pyruvate synthase. | 0.832 |
LIP_0224 | LIP_3323 | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | Tungsten formylmethanofuran dehydrogenase. | 0.826 |
LIP_0224 | LIP_3324 | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 2-ketoisovalerate ferredoxin reductase. | 0.807 |
LIP_0224 | LIP_3325 | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | MFS transporter. | 0.803 |
LIP_0224 | LIP_3326 | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 2-oxoglutarate ferredoxin oxidoreductase subunit gamma. | 0.810 |
LIP_0224 | LIP_3534 | acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 2-oxoacid ferredoxin oxidoreductase. | 0.803 |
LIP_1176 | LIP_1177 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.940 |
LIP_1176 | LIP_1411 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Isocitrate dehydrogenase. | 0.826 |
LIP_1176 | LIP_3323 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Tungsten formylmethanofuran dehydrogenase. | 0.805 |
LIP_1176 | LIP_3324 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 2-ketoisovalerate ferredoxin reductase. | 0.821 |
LIP_1176 | LIP_3325 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | MFS transporter. | 0.816 |
LIP_1176 | LIP_3326 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 2-oxoglutarate ferredoxin oxidoreductase subunit gamma. | 0.812 |
LIP_1176 | LIP_3534 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 2-oxoacid ferredoxin oxidoreductase. | 0.816 |
LIP_1177 | LIP_1176 | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.940 |
page 1 of 5