STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_33262-oxoglutarate ferredoxin oxidoreductase subunit gamma. (178 aa)    
Predicted Functional Partners:
LIP_3325
MFS transporter.
 
 0.997
LIP_0017
Pyruvate synthase.
 
 
 0.980
LIP_3324
2-ketoisovalerate ferredoxin reductase.
 
 
 0.957
LIP_3323
Tungsten formylmethanofuran dehydrogenase.
 
  
 0.907
LIP_1411
Isocitrate dehydrogenase.
     
  0.900
LIP_1176
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.812
LIP_1177
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.812
LIP_0224
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.810
LIP_1570
Adenylosuccinate lyase.
  
 
  0.808
LIP_3534
2-oxoacid ferredoxin oxidoreductase.
 
 
 0.808
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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