STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_3362Hypothetical protein. (398 aa)    
Predicted Functional Partners:
LIP_2529
Cytochrome C.
  
 
 0.781
LIP_1513
Hypothetical protein.
  
 
 0.780
LIP_3451
Hypothetical protein.
  
     0.773
LIP_1128
Methanol dehydrogenase.
 
  
 0.753
LIP_0847
Hypothetical protein.
  
     0.749
LIP_1131
ABC transporter substrate-binding protein.
  
    0.668
LIP_1127
Amino acid ABC transporter substrate-binding protein.
  
     0.627
LIP_1161
Hypothetical protein.
   
   0.572
LIP_1126
Hypothetical protein.
 
    0.524
LIP_3360
Methyltransferase type 11.
 
     0.503
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.