STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_3364Iron ABC transporter permease. (530 aa)    
Predicted Functional Partners:
LIP_3365
Iron ABC transporter substrate-binding protein.
 
 0.997
LIP_3363
ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.992
LIP_2766
Hypothetical protein.
 
 
 0.953
LIP_2765
Membrane protein.
  
  
 
0.928
LIP_2764
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.923
LIP_1014
Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.669
LIP_2090
Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.
  
 0.551
LIP_1012
ABC transporter substrate-binding protein.
 
  
 0.540
thiG
Bifunctional sulfur carrier protein/thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.439
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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