STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_3399ATPase. (935 aa)    
Predicted Functional Partners:
LIP_1978
Sodium:proton antiporter.
  
 
 0.676
LIP_1749
Magnesium transporter MgtC.
  
 
 0.636
LIP_1185
Hypothetical protein.
   
 
 0.632
LIP_0475
Hypothetical protein.
   
 0.603
LIP_3091
F0F1 ATP synthase subunit C.
   
 0.573
LIP_1783
1-acyl-sn-glycerol-3-phosphate acyltransferase.
   
 0.543
LIP_3398
Phosphohydrolase.
       0.507
LIP_3125
Peptidase; Belongs to the peptidase M50B family.
 
    0.484
LIP_3561
Hypothetical protein.
     
 0.472
LIP_0714
Zinc transporter ZitB.
    
 0.442
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.