STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_34092-oxoglutarate ferredoxin oxidoreductase subunit beta. (318 aa)    
Predicted Functional Partners:
LIP_3408
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
 0.999
LIP_3535
Pyruvate ferredoxin oxidoreductase.
 0.999
LIP_3584
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
 0.999
LIP_0016
Ferredoxin.
  
 0.992
LIP_3337
Hypothetical protein.
 0.991
LIP_3324
2-ketoisovalerate ferredoxin reductase.
 0.979
LIP_3023
Malic enzyme.
   
 0.937
ldh
Lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
 0.925
LIP_3338
2-oxoglutarate synthase.
  
  
 
0.922
LIP_1440
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.919
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.