STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_3609Hypothetical protein. (434 aa)    
Predicted Functional Partners:
LIP_2549
Germination protein YpeB.
  
     0.709
LIP_3608
Hypothetical protein.
 
     0.694
LIP_0593
Hypothetical protein.
  
     0.595
LIP_3610
Hypothetical protein.
       0.590
LIP_1389
RHS repeat-associated core domain protein.
  
     0.557
LIP_2834
Peptidoglycan-binding protein LysM.
  
     0.457
LIP_2547
Hypothetical protein.
  
     0.449
LIP_3207
Hypothetical protein.
  
     0.433
LIP_3611
Hypothetical protein.
       0.425
LIP_3612
Hypothetical protein.
       0.425
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.