STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIP_3614Hypothetical protein. (89 aa)    
Predicted Functional Partners:
LIP_3602
LacI family transcriptional regulator.
 
     0.645
LIP_3615
Hypothetical protein.
 
     0.602
LIP_3625
Hypothetical protein.
  
    0.552
LIP_1285
DeoR family transcriptional regulator.
  
     0.549
LIP_1796
Membrane protein.
  
     0.516
LIP_2972
MerR family transcriptional regulator.
  
     0.433
LIP_3617
Hypothetical protein.
       0.410
LIP_3249
50S ribosomal protein L14.
  
     0.403
LIP_1777
Hypothetical protein.
  
     0.401
Your Current Organism:
Limnochorda pilosa
NCBI taxonomy Id: 1555112
Other names: DSM 28787, L. pilosa, Limnochorda pilosa Watanabe et al. 2015, NBRC 110152, bacterium HC45, strain HC45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.