Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JP36_02960 | JP36_02970 | JP36_02960 | JP36_02970 | Peptidase M15. | Hypothetical protein; Belongs to the ArsC family. | 0.793 |
JP36_02960 | JP36_02975 | JP36_02960 | JP36_02975 | Peptidase M15. | NUDIX hydrolase. | 0.542 |
JP36_02960 | JP36_05610 | JP36_02960 | JP36_05610 | Peptidase M15. | D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Belongs to the peptidase S11 family. | 0.596 |
JP36_02960 | JP36_06650 | JP36_02960 | JP36_06650 | Peptidase M15. | Penicillin-binding protein. | 0.592 |
JP36_02960 | dapE | JP36_02960 | JP36_02965 | Peptidase M15. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.793 |
JP36_02960 | ddl | JP36_02960 | JP36_07855 | Peptidase M15. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.523 |
JP36_02960 | ftsI | JP36_02960 | JP36_07895 | Peptidase M15. | Peptidoglycan synthase; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.495 |
JP36_02960 | gshAB | JP36_02960 | JP36_03145 | Peptidase M15. | Bifunctional glutamate--cysteine ligase/glutathione synthetase; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily. | 0.523 |
JP36_02960 | mrcB | JP36_02960 | JP36_02085 | Peptidase M15. | Bifunctional glycosyl transferase/transpeptidase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.490 |
JP36_02960 | mrdA | JP36_02960 | JP36_05625 | Peptidase M15. | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.495 |
JP36_02970 | JP36_02960 | JP36_02970 | JP36_02960 | Hypothetical protein; Belongs to the ArsC family. | Peptidase M15. | 0.793 |
JP36_02970 | JP36_02975 | JP36_02970 | JP36_02975 | Hypothetical protein; Belongs to the ArsC family. | NUDIX hydrolase. | 0.559 |
JP36_02970 | dapE | JP36_02970 | JP36_02965 | Hypothetical protein; Belongs to the ArsC family. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.834 |
JP36_02975 | JP36_02960 | JP36_02975 | JP36_02960 | NUDIX hydrolase. | Peptidase M15. | 0.542 |
JP36_02975 | JP36_02970 | JP36_02975 | JP36_02970 | NUDIX hydrolase. | Hypothetical protein; Belongs to the ArsC family. | 0.559 |
JP36_02975 | dapE | JP36_02975 | JP36_02965 | NUDIX hydrolase. | Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. | 0.548 |
JP36_05610 | JP36_02960 | JP36_05610 | JP36_02960 | D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Belongs to the peptidase S11 family. | Peptidase M15. | 0.596 |
JP36_05610 | JP36_06650 | JP36_05610 | JP36_06650 | D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Belongs to the peptidase S11 family. | Penicillin-binding protein. | 0.679 |
JP36_05610 | ftsI | JP36_05610 | JP36_07895 | D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Belongs to the peptidase S11 family. | Peptidoglycan synthase; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. | 0.688 |
JP36_05610 | mrcB | JP36_05610 | JP36_02085 | D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5; removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors; Belongs to the peptidase S11 family. | Bifunctional glycosyl transferase/transpeptidase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.651 |
page 1 of 3