Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JP36_01315 | JP36_04760 | JP36_01315 | JP36_04760 | Phosphodiesterase. | Hypothetical protein. | 0.425 |
JP36_01315 | JP36_08680 | JP36_01315 | JP36_08680 | Phosphodiesterase. | Lipopolysaccharide biosynthesis protein WzzE. | 0.500 |
JP36_01315 | glpB | JP36_01315 | JP36_11100 | Phosphodiesterase. | Glycerol-3-phosphate dehydrogenase; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor. | 0.811 |
JP36_01315 | glpT | JP36_01315 | JP36_01310 | Phosphodiesterase. | Sn-glycerol-3-phosphate transporter; Catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell. | 0.609 |
JP36_04760 | JP36_01315 | JP36_04760 | JP36_01315 | Hypothetical protein. | Phosphodiesterase. | 0.425 |
JP36_04760 | JP36_04945 | JP36_04760 | JP36_04945 | Hypothetical protein. | Hypothetical protein. | 0.422 |
JP36_04760 | JP36_08340 | JP36_04760 | JP36_08340 | Hypothetical protein. | Major facilitator transporter. | 0.519 |
JP36_04760 | JP36_08680 | JP36_04760 | JP36_08680 | Hypothetical protein. | Lipopolysaccharide biosynthesis protein WzzE. | 0.478 |
JP36_04760 | glpB | JP36_04760 | JP36_11100 | Hypothetical protein. | Glycerol-3-phosphate dehydrogenase; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor. | 0.507 |
JP36_04760 | glpT | JP36_04760 | JP36_01310 | Hypothetical protein. | Sn-glycerol-3-phosphate transporter; Catalyzes the uptake of glycerol-3-phosphate into the cell with the simultaneous export of inorganic phosphate from the cell. | 0.423 |
JP36_04760 | pheA | JP36_04760 | JP36_11070 | Hypothetical protein. | Chorismate mutase; Catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis. | 0.439 |
JP36_04945 | JP36_04760 | JP36_04945 | JP36_04760 | Hypothetical protein. | Hypothetical protein. | 0.422 |
JP36_08340 | JP36_04760 | JP36_08340 | JP36_04760 | Major facilitator transporter. | Hypothetical protein. | 0.519 |
JP36_08340 | pheA | JP36_08340 | JP36_11070 | Major facilitator transporter. | Chorismate mutase; Catalyzing the formation of prephenate from chorismate and the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis. | 0.439 |
JP36_08680 | JP36_01315 | JP36_08680 | JP36_01315 | Lipopolysaccharide biosynthesis protein WzzE. | Phosphodiesterase. | 0.500 |
JP36_08680 | JP36_04760 | JP36_08680 | JP36_04760 | Lipopolysaccharide biosynthesis protein WzzE. | Hypothetical protein. | 0.478 |
JP36_08680 | glpB | JP36_08680 | JP36_11100 | Lipopolysaccharide biosynthesis protein WzzE. | Glycerol-3-phosphate dehydrogenase; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor. | 0.660 |
glpB | JP36_01315 | JP36_11100 | JP36_01315 | Glycerol-3-phosphate dehydrogenase; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor. | Phosphodiesterase. | 0.811 |
glpB | JP36_04760 | JP36_11100 | JP36_04760 | Glycerol-3-phosphate dehydrogenase; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor. | Hypothetical protein. | 0.507 |
glpB | JP36_08680 | JP36_11100 | JP36_08680 | Glycerol-3-phosphate dehydrogenase; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor. | Lipopolysaccharide biosynthesis protein WzzE. | 0.660 |
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