Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JP36_02140 | JP36_06390 | JP36_02140 | JP36_06390 | Methionine synthase. | Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine. | 0.699 |
JP36_02140 | JP36_08030 | JP36_02140 | JP36_08030 | Methionine synthase. | Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine. | 0.736 |
JP36_02140 | JP36_08125 | JP36_02140 | JP36_08125 | Methionine synthase. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.572 |
JP36_02140 | luxS | JP36_02140 | JP36_06785 | Methionine synthase. | S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.698 |
JP36_02140 | metF | JP36_02140 | JP36_00535 | Methionine synthase. | MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; Belongs to the methylenetetrahydrofolate reductase family. | 0.841 |
JP36_02140 | metL | JP36_02140 | JP36_00790 | Methionine synthase. | Aspartate kinase; Multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways. | 0.857 |
JP36_02140 | thrA | JP36_02140 | JP36_02415 | Methionine synthase. | Aspartate kinase; Multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways. | 0.857 |
JP36_06390 | JP36_02140 | JP36_06390 | JP36_02140 | Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine. | Methionine synthase. | 0.699 |
JP36_06390 | JP36_08030 | JP36_06390 | JP36_08030 | Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine. | Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine. | 0.661 |
JP36_06390 | JP36_08125 | JP36_06390 | JP36_08125 | Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.905 |
JP36_06390 | luxS | JP36_06390 | JP36_06785 | Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine. | S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.697 |
JP36_06390 | metF | JP36_06390 | JP36_00535 | Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine. | MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; Belongs to the methylenetetrahydrofolate reductase family. | 0.774 |
JP36_06390 | metL | JP36_06390 | JP36_00790 | Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine. | Aspartate kinase; Multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways. | 0.882 |
JP36_06390 | thrA | JP36_06390 | JP36_02415 | Cystathionine beta-lyase; Catalyzes the formation of L-homocysteine from cystathionine. | Aspartate kinase; Multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways. | 0.882 |
JP36_06640 | JP36_06855 | JP36_06640 | JP36_06855 | Hypothetical protein. | Aerobic respiration control protein. | 0.999 |
JP36_06640 | luxS | JP36_06640 | JP36_06785 | Hypothetical protein. | S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.799 |
JP36_06855 | JP36_06640 | JP36_06855 | JP36_06640 | Aerobic respiration control protein. | Hypothetical protein. | 0.999 |
JP36_06855 | JP36_08125 | JP36_06855 | JP36_08125 | Aerobic respiration control protein. | Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.409 |
JP36_06855 | luxS | JP36_06855 | JP36_06785 | Aerobic respiration control protein. | S-ribosylhomocysteinase; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.862 |
JP36_06855 | metL | JP36_06855 | JP36_00790 | Aerobic respiration control protein. | Aspartate kinase; Multifunctional homodimeric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways. | 0.552 |
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