A0A4P9X2N4 protein (Caulochytrium protostelioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4P9X2N4

Uncharacterized protein. (418 aa)

Predicted Functional Partners:

A0A4P9WWT7

0.999

A0A4P9X3G5

0.999

A0A4P9X8K4

0.998

A0A4P9WVY9

0.997

A0A4P9WX92

0.997

A0A4P9X1Q0

0.997

A0A4P9X5X3

0.997

A0A4P9XDE8

0.997

A0A4P9XEA3

0.997

A0A4P9XFD4

0.997

Your Current Organism:

Caulochytrium protostelioides

NCBI taxonomy Id: 1555241
Other names: C. protostelioides

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9WVY9	A0A4P9WWT7	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A4P9WVY9	A0A4P9WX92	Uncharacterized protein.	DNA-directed RNA polymerase I.	0.996
A0A4P9WVY9	A0A4P9X1Q0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
A0A4P9WVY9	A0A4P9X2N4	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A4P9WVY9	A0A4P9X3G5	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.997
A0A4P9WVY9	A0A4P9X5X3	Uncharacterized protein.	RPOLD domain-containing protein.	0.997
A0A4P9WVY9	A0A4P9X8K4	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A4P9WVY9	A0A4P9XDE8	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.975
A0A4P9WVY9	A0A4P9XEA3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
A0A4P9WVY9	A0A4P9XFD4	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A4P9WWT7	A0A4P9WVY9	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A4P9WWT7	A0A4P9WX92	Uncharacterized protein.	DNA-directed RNA polymerase I.	0.996
A0A4P9WWT7	A0A4P9X1Q0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
A0A4P9WWT7	A0A4P9X2N4	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A4P9WWT7	A0A4P9X3G5	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
A0A4P9WWT7	A0A4P9X5X3	Uncharacterized protein.	RPOLD domain-containing protein.	0.994
A0A4P9WWT7	A0A4P9X8K4	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A4P9WWT7	A0A4P9XDE8	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.980
A0A4P9WWT7	A0A4P9XEA3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
A0A4P9WWT7	A0A4P9XFD4	Uncharacterized protein.	Uncharacterized protein.	0.995