A0A4P9X906 protein (Caulochytrium protostelioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4P9X906

Protein kinase domain-containing protein. (210 aa)

Predicted Functional Partners:

A0A4V1IUE0

0.775

A0A4P9X648

0.727

A0A4P9X8F1

0.727

A0A4V1IVG9

0.686

A0A4V1IV03

0.676

A0A4P9X336

0.667

A0A4P9XGC4

0.653

A0A4V1ITQ4

0.637

A0A4P9X8V7

0.619

A0A4P9XD48

0.619

Your Current Organism:

Caulochytrium protostelioides

NCBI taxonomy Id: 1555241
Other names: C. protostelioides

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9X336	A0A4P9X648	Protein kinase domain-containing protein.	Uncharacterized protein.	0.795
A0A4P9X336	A0A4P9X8F1	Protein kinase domain-containing protein.	Uncharacterized protein.	0.552
A0A4P9X336	A0A4P9X8V7	Protein kinase domain-containing protein.	Rap-GAP domain-containing protein.	0.593
A0A4P9X336	A0A4P9X906	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.667
A0A4P9X336	A0A4P9XD48	Protein kinase domain-containing protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.436
A0A4P9X336	A0A4P9XGC4	Protein kinase domain-containing protein.	Raptor_N domain-containing protein.	0.568
A0A4P9X336	A0A4V1ITQ4	Protein kinase domain-containing protein.	Kinase-like protein.	0.707
A0A4P9X336	A0A4V1IUE0	Protein kinase domain-containing protein.	AMPKBI domain-containing protein.	0.815
A0A4P9X648	A0A4P9X336	Uncharacterized protein.	Protein kinase domain-containing protein.	0.795
A0A4P9X648	A0A4P9X8V7	Uncharacterized protein.	Rap-GAP domain-containing protein.	0.787
A0A4P9X648	A0A4P9X906	Uncharacterized protein.	Protein kinase domain-containing protein.	0.727
A0A4P9X648	A0A4P9XD48	Uncharacterized protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.563
A0A4P9X648	A0A4P9XGC4	Uncharacterized protein.	Raptor_N domain-containing protein.	0.795
A0A4P9X648	A0A4V1ITQ4	Uncharacterized protein.	Kinase-like protein.	0.818
A0A4P9X648	A0A4V1IUE0	Uncharacterized protein.	AMPKBI domain-containing protein.	0.999
A0A4P9X8F1	A0A4P9X336	Uncharacterized protein.	Protein kinase domain-containing protein.	0.552
A0A4P9X8F1	A0A4P9X8V7	Uncharacterized protein.	Rap-GAP domain-containing protein.	0.667
A0A4P9X8F1	A0A4P9X906	Uncharacterized protein.	Protein kinase domain-containing protein.	0.727
A0A4P9X8F1	A0A4P9XD48	Uncharacterized protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.563
A0A4P9X8F1	A0A4P9XGC4	Uncharacterized protein.	Raptor_N domain-containing protein.	0.680