A0A4P9XBG2 protein (Caulochytrium protostelioides)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4P9XBG2

Uncharacterized protein. (334 aa)

Predicted Functional Partners:

A0A4P9WX33

0.945

A0A4P9XFT6

0.935

A0A4P9X4W9

0.901

A0A4P9X3F8

0.887

A0A4P9X2F0

0.871

A0A4P9XD24

0.820

A0A4P9X882

0.817

A0A4P9WYH5

0.794

A0A4P9X0L8

0.790

A0A4P9X7G4

0.790

Your Current Organism:

Caulochytrium protostelioides

NCBI taxonomy Id: 1555241
Other names: C. protostelioides

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4P9WX33	A0A4P9WYH5	RhoA protein.	EF-hand.	0.803
A0A4P9WX33	A0A4P9X0L8	RhoA protein.	Ras-related C3 botulinum toxin substrate 1.	0.874
A0A4P9WX33	A0A4P9X2F0	RhoA protein.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.736
A0A4P9WX33	A0A4P9X3F8	RhoA protein.	Guanylate kinase-like domain-containing protein.	0.767
A0A4P9WX33	A0A4P9X4W9	RhoA protein.	Uncharacterized protein.	0.620
A0A4P9WX33	A0A4P9X7G4	RhoA protein.	Uncharacterized protein.	0.874
A0A4P9WX33	A0A4P9X882	RhoA protein.	GP-PDE domain-containing protein.	0.709
A0A4P9WX33	A0A4P9XBG2	RhoA protein.	Uncharacterized protein.	0.945
A0A4P9WX33	A0A4P9XD24	RhoA protein.	Uncharacterized protein.	0.999
A0A4P9WX33	A0A4P9XFT6	RhoA protein.	Uncharacterized protein.	0.996
A0A4P9WYH5	A0A4P9WX33	EF-hand.	RhoA protein.	0.803
A0A4P9WYH5	A0A4P9X0L8	EF-hand.	Ras-related C3 botulinum toxin substrate 1.	0.751
A0A4P9WYH5	A0A4P9X2F0	EF-hand.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.688
A0A4P9WYH5	A0A4P9X3F8	EF-hand.	Guanylate kinase-like domain-containing protein.	0.848
A0A4P9WYH5	A0A4P9X7G4	EF-hand.	Uncharacterized protein.	0.751
A0A4P9WYH5	A0A4P9X882	EF-hand.	GP-PDE domain-containing protein.	0.562
A0A4P9WYH5	A0A4P9XBG2	EF-hand.	Uncharacterized protein.	0.794
A0A4P9WYH5	A0A4P9XFT6	EF-hand.	Uncharacterized protein.	0.784
A0A4P9X0L8	A0A4P9WX33	Ras-related C3 botulinum toxin substrate 1.	RhoA protein.	0.874
A0A4P9X0L8	A0A4P9WYH5	Ras-related C3 botulinum toxin substrate 1.	EF-hand.	0.751