Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG65647.1 | OJG65648.1 | RV09_GL001141 | RV09_GL001142 | Hypothetical protein. | DNA helicase II/ATP-dependent DNA helicase PcrA. | 0.606 |
OJG65647.1 | OJG65649.1 | RV09_GL001141 | RV09_GL001143 | Hypothetical protein. | TatD family hydrolase. | 0.769 |
OJG65647.1 | rnmV | RV09_GL001141 | RV09_GL001144 | Hypothetical protein. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.769 |
OJG65647.1 | rsmA | RV09_GL001141 | RV09_GL001145 | Hypothetical protein. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.677 |
OJG65648.1 | OJG65647.1 | RV09_GL001142 | RV09_GL001141 | DNA helicase II/ATP-dependent DNA helicase PcrA. | Hypothetical protein. | 0.606 |
OJG65648.1 | OJG65649.1 | RV09_GL001142 | RV09_GL001143 | DNA helicase II/ATP-dependent DNA helicase PcrA. | TatD family hydrolase. | 0.814 |
OJG65648.1 | rnmV | RV09_GL001142 | RV09_GL001144 | DNA helicase II/ATP-dependent DNA helicase PcrA. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.812 |
OJG65648.1 | rsmA | RV09_GL001142 | RV09_GL001145 | DNA helicase II/ATP-dependent DNA helicase PcrA. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.745 |
OJG65649.1 | OJG65647.1 | RV09_GL001143 | RV09_GL001141 | TatD family hydrolase. | Hypothetical protein. | 0.769 |
OJG65649.1 | OJG65648.1 | RV09_GL001143 | RV09_GL001142 | TatD family hydrolase. | DNA helicase II/ATP-dependent DNA helicase PcrA. | 0.814 |
OJG65649.1 | OJG65658.1 | RV09_GL001143 | RV09_GL001152 | TatD family hydrolase. | Hypothetical protein. | 0.667 |
OJG65649.1 | OJG67571.1 | RV09_GL001143 | RV09_GL002340 | TatD family hydrolase. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.481 |
OJG65649.1 | alaS | RV09_GL001143 | RV09_GL000696 | TatD family hydrolase. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.555 |
OJG65649.1 | metG | RV09_GL001143 | RV09_GL001139 | TatD family hydrolase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. | 0.836 |
OJG65649.1 | polA | RV09_GL001143 | RV09_GL002649 | TatD family hydrolase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.486 |
OJG65649.1 | rnmV | RV09_GL001143 | RV09_GL001144 | TatD family hydrolase. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.918 |
OJG65649.1 | rsmA | RV09_GL001143 | RV09_GL001145 | TatD family hydrolase. | Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.898 |
OJG65649.1 | valS | RV09_GL001143 | RV09_GL001762 | TatD family hydrolase. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.519 |
OJG65658.1 | OJG65649.1 | RV09_GL001152 | RV09_GL001143 | Hypothetical protein. | TatD family hydrolase. | 0.667 |
OJG65658.1 | rnmV | RV09_GL001152 | RV09_GL001144 | Hypothetical protein. | Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. | 0.667 |
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