Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG54046.1 | OJG54047.1 | RV06_GL000439 | RV06_GL000440 | Haloacid dehalogenase. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.806 |
OJG54046.1 | rplY | RV06_GL000439 | RV06_GL000441 | Haloacid dehalogenase. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.563 |
OJG54046.1 | udk | RV06_GL000439 | RV06_GL000437 | Haloacid dehalogenase. | Uridine kinase. | 0.813 |
OJG54047.1 | OJG54046.1 | RV06_GL000440 | RV06_GL000439 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Haloacid dehalogenase. | 0.806 |
OJG54047.1 | OJG54579.1 | RV06_GL000440 | RV06_GL002538 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Exodeoxyribonuclease III (xth). | 0.674 |
OJG54047.1 | OJG55783.1 | RV06_GL000440 | RV06_GL001365 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 23S rRNA (-C5)-methyltransferase. | 0.461 |
OJG54047.1 | cmk | RV06_GL000440 | RV06_GL001301 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.651 |
OJG54047.1 | der | RV06_GL000440 | RV06_GL001297 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.751 |
OJG54047.1 | rplU | RV06_GL000440 | RV06_GL002896 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.400 |
OJG54047.1 | rplY | RV06_GL000440 | RV06_GL000441 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.646 |
OJG54047.1 | scpB | RV06_GL000440 | RV06_GL001310 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.515 |
OJG54047.1 | udk | RV06_GL000440 | RV06_GL000437 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Uridine kinase. | 0.681 |
OJG54579.1 | OJG54047.1 | RV06_GL002538 | RV06_GL000440 | Exodeoxyribonuclease III (xth). | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.674 |
OJG55783.1 | OJG54047.1 | RV06_GL001365 | RV06_GL000440 | 23S rRNA (-C5)-methyltransferase. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.461 |
cmk | OJG54047.1 | RV06_GL001301 | RV06_GL000440 | Cytidylate kinase. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.651 |
cmk | der | RV06_GL001301 | RV06_GL001297 | Cytidylate kinase. | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.980 |
cmk | scpB | RV06_GL001301 | RV06_GL001310 | Cytidylate kinase. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.731 |
cmk | udk | RV06_GL001301 | RV06_GL000437 | Cytidylate kinase. | Uridine kinase. | 0.969 |
der | OJG54047.1 | RV06_GL001297 | RV06_GL000440 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.751 |
der | cmk | RV06_GL001297 | RV06_GL001301 | GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Cytidylate kinase. | 0.980 |
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