STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yahJPutative deaminase; Residues 1 to 460 of 460 are 97.82 pct identical to residues 1 to 460 of 460 from Escherichia coli K-12 Strain MG1655: B0324. (460 aa)    
Predicted Functional Partners:
yahD
Putative transcription factor; Residues 1 to 201 of 201 are 99.50 pct identical to residues 1 to 201 of 201 from Escherichia coli K-12 Strain MG1655: B0318.
 
 
 
 0.891
yahI
Putative kinase; Residues 1 to 316 of 316 are 98.41 pct identical to residues 1 to 316 of 316 from Escherichia coli K-12 Strain MG1655: B0323; Belongs to the carbamate kinase family.
     
 0.811
dsdA
D-serine dehydratase (deaminase); Residues 1 to 442 of 442 are 99.09 pct identical to residues 1 to 442 of 442 from Escherichia coli K-12 Strain MG1655: B2366.
  
   
 0.759
ygjU
Putative transport protein; Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system). Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
      
 0.720
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion; Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. NagB subfamily.
   
  
 0.714
rnk
Regulator of nucleoside diphosphate kinase; May act as an anti-Gre factor; Belongs to the Rnk family.
      
 0.703
hemA
Enzyme in alternate path of synthesis of 5-aminolevulinate; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
      
 0.701
hemY
A late step of protoheme IX synthesis; Involved in a late step of protoheme IX synthesis.
      
 0.701
yahG
Orf, hypothetical protein; Residues 1 to 472 of 472 are 99.15 pct identical to residues 1 to 472 of 472 from Escherichia coli K-12 Strain MG1655: B0321.
 
   
 0.700
hemB
5-aminolevulinate dehydratase = porphobilinogen synthase; Residues 1 to 335 of 335 are 99.10 pct identical to residues 1 to 335 of 335 from Escherichia coli K-12 Strain MG1655: B0369; Belongs to the ALAD family.
      
 0.700
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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