STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaOPutative transcriptional regulator; Plays a role in L-cysteine detoxification. Binds to the dlsT(yhaO)-yhaM operon promoter in the presence but not absence of L- cysteine; activates transcription from the dlsT(yhaO)-yhaM operon. (152 aa)    
Predicted Functional Partners:
asnC
Regulator for asnA, asnC and gidA; Activator of asnA transcription; autogenous regulator of its own transcription; and repressor of the expression of gidA at a post- transcriptional level.
  
   
 0.780
mdlA
ATP-binding component of a transport system; Residues 1 to 590 of 590 are 99.83 pct identical to residues 1 to 590 of 590 from Escherichia coli K-12 Strain MG1655: B0448.
  
  
 0.764
ybaN
Putative gene 58; Residues 1 to 125 of 125 are 100.00 pct identical to residues 1 to 125 of 125 from Escherichia coli K-12 Strain MG1655: B0468.
   
  
 0.707
yejF
Putative ATP-binding component of a transport system; Residues 1 to 529 of 529 are 99.43 pct identical to residues 1 to 529 of 529 from Escherichia coli K-12 Strain MG1655: B2180; Belongs to the ABC transporter superfamily.
      
 0.704
mdlB
Putative ATP-binding component of a transport system; Residues 1 to 593 of 593 are 100.00 pct identical to residues 1 to 593 of 593 from Escherichia coli K-12 Strain MG1655: B0449; Belongs to the ABC transporter superfamily. Drug exporter-2 (TC 3.A.1.117) family.
  
    0.695
yhaO
Putative transport system permease protein; Transports both D- and L-serine; allows growth of strain CFT073 cells normally unable to transport D-serine on that substrate. Transport relies on the H(+) gradient and is not competed by L- threonine. May play a role in L-cysteine detoxification (By similarity).
      
 0.610
ybiH
Putative transcriptional regulator; Residues 1 to 227 of 227 are 100.00 pct identical to residues 1 to 227 of 227 from Escherichia coli K-12 Strain MG1655: B0796.
      
 0.546
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.535
nlpD
Lipoprotein; Residues 1 to 379 of 379 are 99.73 pct identical to residues 1 to 379 of 379 from Escherichia coli K-12 Strain MG1655: B2742.
  
   
 0.529
gltB
Glutamate synthase, large subunit; Residues 1 to 1517 of 1517 are 99.53 pct identical to residues 1 to 1517 of 1517 from Escherichia coli K-12 Strain MG1655: B3212.
     
 0.482
Your Current Organism:
Escherichia coli O157H7 EDL933
NCBI taxonomy Id: 155864
Other names: E. coli O157:H7 str. EDL933, Escherichia coli O157:H7 EDL933, Escherichia coli O157:H7 str. EDL933, Escherichia coli O157:H7 strain EDL933
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